Seeking patterns of antibiotic resistance in ATLAS, an open, raw MIC database with patient metadata

  27 May 2022

Antibiotic resistance represents a growing medical concern where raw, clinical datasets are under-exploited as a means to track the scale of the problem. We therefore sought patterns of antibiotic resistance in the Antimicrobial Testing Leadership and Surveillance (ATLAS) database. ATLAS holds 6.5M minimal inhibitory concentrations (MICs) for 3,919 pathogen-antibiotic pairs isolated from 633k patients in 70 countries between 2004 and 2017. 

Further reading: Nature Communications
Author(s): Pablo Catalán, Emily Wood, Jessica M. A. Blair, Ivana Gudelj, Jonathan R. Iredell & Robert E. Beardmore
Effective Surveillance   Smart Innovations  
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